... one of the main functions of an analogy or model is to suggest extensions of the theory by considering extensions of the analogy, since more is known about the analogy than is known about the subject matter of the theory itself … A collection of observable concepts in a purely formal hypothesis suggesting no analogy with anything would consequently not suggest either any directions for its own development.

An immune system of enormous complexity is present in all vertebrate animals. When we place a population of lymphocytes from such an animal in appropriate tissue culture fluid, and when we add an antigen, the lymphocytes will produce specific antibody molecules, in the absense of any nerve cells. I find it astonishing that the immune system embodies a degree of complexity which suggests some more or less superficial though striking analogies with human language, and that this cognitive system has evolved and functions without assistance of the brain.

Analogies, it is true, decide nothing but they can make one feel more at home.

Here I shall present, without using Analysis [mathematics], the principles and general results of the Théorie, applying them to the most important questions of life, which are indeed, for the most part, only problems in probability. One may even say, strictly speaking, that almost all our knowledge is only probable; and in the small number of things that we are able to know with certainty, in the mathematical sciences themselves, the principal means of arriving at the truth—induction and analogy—are based on probabilities, so that the whole system of human knowledge is tied up with the theory set out in this essay.

It is often in our Power to obtain an Analogy where we cannot have an Induction.

More about the selection theory: Jerne meant that the Socratic idea of learning was a fitting analogy for 'the logical basis of the selective theories of antibody formation': Can the truth (the capability to synthesize an antibody) be learned? If so, it must be assumed not to pre-exist; to be learned, it must be acquired. We are thus confronted with the difficulty to which Socrates calls attention in Meno [ ... ] namely, that it makes as little sense to search for what one does not know as to search for what one knows; what one knows, one cannot search for, since one knows it already, and what one does not know, one cannot search for, since one does not even know what to search for. Socrates resolves this difficulty by postulating that learning is nothing but recollection. The truth (the capability to synthesize an antibody) cannot be brought in, but was already inherent.

Newton supposed that the case of the planet was similar to that of [a ball spun around on the end of an elastic string]; that it was always pulled in the direction of the sun, and that this attraction or pulling of the sun produced the revolution of the planet, in the same way that the traction or pulling of the elastic string produces the revolution of the ball. What there is between the sun and the planet that makes each of them pull the other, Newton did not know; nobody knows to this day; and all we are now able to assert positively is that the known motion of the planet is precisely what would be produced if it were fastened to the sun by an elastic string, having a certain law of elasticity. Now observe the nature of this discovery, the greatest in its consequences that has ever yet been made in physical science:—
I. It begins with an hypothesis, by supposing that there is an analogy between the motion of a planet and the motion of a ball at the end of a string.
II. Science becomes independent of the hypothesis, for we merely use it to investigate the properties of the motion, and do not trouble ourselves further about the cause of it.

The scientific discovery appears first as the hypothesis of an analogy; and science tends to become independent of the hypothesis.